I have the TMAT. The AT feature did not work with my build (Zippers 120). I had my bike tuned by a professional very familiar with the TMAX (non-AT ECM) and complimentary of its features. Bike ran great went I took it for a test ride, however, while riding home (upstate New York to Virginia) the bike ran progressively worse until it ran almost as bad as before the tune. When I spoke with my tuner, he advised to disable the closed loop feature and run the bike in open loop to isolate the O2 feedback to the ECM. Once I did this (very simple fix) bike ran great again. Since I paid for a custom tune anyway, I decided to remove the O2 sensors, plug the bungs in the pipes, tuck the TMAT wires away and run the ECM in open loop and I haven't had any issues since. I am not an expert on these ECMs, but my recommendation to anyone having tuning issues with the TMAT is to first isolate the base map from the AT. Run the bike in open loop, that will tell you if there is a problem with your base map. If the bike runs fine, enable closed loop and if it starts to run poorly, at least you know the AT feature is causing the problem. Of course, there are reasons for the AT not working properly other that the AT itself (i.e. intake/exhaust leaks, etc.) that need to be checked.
Like all technology, it evolves over time. For those who have no problems, when did you purchase your system? Even though my system is only a year old, I am sure upgrades/changes have been made that may have improved the operation of this feature. I admit that I haven't paid any attention to the TMAT website since my tune because everything else works perfect. Most of the others I know of with problems bought their systems before me.
I am open to installing any upgrades to my system that will make the AT work, but I don't see a benefit to me at this stage. Even if it did work, I don't think I want those O2 sensor wires hanging from my pipes again, so much cleaner looking without them!