Most center stands I'm familiar with, including the RIVCO model I've been using for about ten years, won't work with cross-under exhaust systems. I was interested in the S&S system that is similar to the 2 into 1 into 2 system Harley uses these days on touring models, and had to abandon the idea when it became obvious the exhaust wouldn't work and couldn't be modified to work with that kind of exhaust. I'm not familiar with the MRi stand you mentioned, but I would imagine the physics haven't changed and both parts can't share the same space.
How important is that ghost pipe to you? IMHO the center stand is a much more important option than a fake muffler on the left side. I resisted installing a 2 into 1 for a long time due to the visual appearance issue, until I finally realized function is much more important than how it looks. And when you're riding down the road, you can't see the mufflers anyway.
JMHO - Jerry