The wheels were supposed to have been checked when the wheels were removed to replace the tires. No one at the dealers feels the alignment is an issue with the new frame, unlike the old one, and I have not been able to find much on the internet about it. Do you have an idea on where else to look? I will ask the dealer if I can look at their service manual as soon as I can get over there. Thank you for the input.
The old frame had special tools and a shop manual procedure to align the engine and swingarm to the frame. When they changed the frame and the mounts for the engine, they eliminated the adjustability. However, just because Harley claims alignment is not needed (or possible) doesn't mean they always build every frame to the extremely tight tolerances such a thing requires. In other words, considering all the other issues they have with wider than normal industry tolerances, I wouldn't just assume, as your dealer obviously did, that because it isn't adjustable it must be good.
If you want to verify alignment, see if you can find a shop that does accident repairs and has frame equipment. I've seen laser alignment rigs that allow you to measure front to rear tire alignment as well as other things, and I've also seen very simple methods that use a couple long straightedges and a regular ruler (I've done that myself in the old days). I've even seen a recommendation to use a couple long fluorescent tubes as the straightedges. Where there is a will, there are usually several ways.
I have also seen several reports like the one posted by Ernie about those wheels. Before you get carried away checking frames and alignment you may want to just follow his advice and have the dealer swap the wheel from a different model for your's and take a test ride. Harley hates to ever admit a screwup, and rarely does unless they're pushed to do so, but at least if a different wheel eliminates the problem you will have some evidence you can use in your quest to get the bike fixed or replaced (lemon law anyone?).
Jerry