Thank you both, as far as the fuel goes it does not seem to matter if the bike is full or near empty. The entire fuel system in side the tank was replaced around 2000 miles ago. The second Harley dealership just checked the entire fuel system again and could not find any defects, full fuel pressure even during the engine miss.
More info, I will try to be as specific as I can, the bike cuts out/misses around 2700-3200 rpm and there does not seem to be rime nor reason as to when it does it. This last time the HD shop road the bike and was able to witness the miss, they replaced the plugs (third set since the problem Begin) and said they found the rear plug wire to be bad. They said they had checked the fuel system, injectors, and electrical system on the bike, I have run Vance and Hines Big Radius on the bike for the last 25,000 miles with no problems. The bike is pretty much stock besides, exhaust, apes, seat and sissybar. The HD dealership does not believe the problem is exhaust related. I my self feel like an injector is cutting in and out, they tell me that if that was the case they would be able to pin point it.
I have a mechanic shop and realize that I am asking the darn near impossible from you with out you being able to see and hear it run, just graspping at straws hoping someone else may have had a similar problem.
Ride Safe.