There are several posts in this section about replacing mufflers on the '17s. The end result seems to be that almost all of the restriction on '17s is in the header. If you change just the mufflers (or baffles), there won't be much of a change. Even the sound level doesn't go up a lot, even with normally-very-loud mufflers, such as CFRs.
As to tuning the bike, whether with TTS, Direct Link, Power Vision, or anything else...that depends entirely on the competence of the person doing the tuning. There are some good ones out there, and you can get recommendations on here--just tell where you are. Unfortunately, most tuner guys aren't that great, and the majority of HD dealers have mediocre tuners.
If you're getting a canned map, such as from Fuel Moto, it depends on how close your bike is to the bike the tuner-person used to develop the map.
The professional tuner guys will use a full-featured tuner box like those above. Although there are many people happy with the FP3, it doesn't have full "access" to change all the things the full-featured boxes can. Many people bought an FP3 or something like it, and either found it didn't do much for them, or later they wanted to do major mods (like you've done to earlier bikes) and it wouldn't dial in with a big cam and porting and so on...so they ended up dumping the "half-measure" box, at a loss, and buying one of the capable ones.