First off, WELCOME TO THE SITE!!!! If you do some looking, you'll find LOTS of info to help you out. The MM injection on the '01 was only fair, but it can do a great job on some bikes. The power commander should help things just fine. You may want to try things a step at a time, just to see how your FI system handles it. Some can do a good job, some won't tolerate any changes at all. Once you get the commander dialed in, you'll really wake up that motor. It'll run quite well with minimal mods. You can even go headpan's route and take the FI system off and put on a carb. He had little trouble doing it and is very pleased with the results. The stock pipes can do pretty well if you remove the plug in the rear of each. Opens them up some and helps flow better. Works well with the aircleaner. So what color do you have???