Which bike are you talking about?
Several things come to mind, and I'd suggest starting with the simplest. Exhaust leaks at the head can make noises that anyone would swear are internal, and your specified top rear location would be in that area. Another item that has been problematic in recent years is the rear cylinder exhaust valves seizing in the guides. Then we have the valve lifter failures that tend to sound like the top end also. And if you have one of the engines with the automatic compression releases, they are always a suspect as well.
It's very hard to diagnose a noise over the internet, and unfortunately with a Harley there are a multitude of fairly common issues that could cause your problem. You might want to find a good independent mechanic to help you narrow this down, since it appears your dealership is staffed with the typical hear nothing, see nothing, do nothing types.
Good luck.
Jerry