I have never seen a dealer mark-up a part that was ordered color matched because it was for a CVO. Maybe some do, avoid those. Easiest way is to order one color matched from a 20% dealer or find you a quality shop, hopefully in your area that sprays PPG or has a Jobber who sells PPG and will mix him your colors and supply the PPG recommended steps for spraying your color and go that way.
I have painted alot of CVO parts and it is not hard to do or to obtain the colors (contrary to what is usually posted on this site) but I understand the steps you have to take and I am patient. If you don't have some knowledge in this field and can discuss what you are demanding the final result to be with the shop of your choice, buy the pre-painted parts. Not going to save much if you pay retail labor and materials cost for a local to do it.
For me to do it, Labor would be min $400 (Sand bare tourpak, prime, sand primer, Prime again, finish sand, Seal tourpak, spray base color, tape for second color, sand second color area, spray second color (this would be flames/stripes etc), sand again feathering second coat edges then spray clearcoat, multiple coats, dry for first hour with max filtered temp controlled air then overnight, block sand until totally smooth with multiple grades of sand paper finishing up with, for me, 2500 grit then buff until a mirror finish , PLUS materials would be over $200. One PINT of Typhoon maroon for my RG cost me $80 and that is not inc any additives, thinner, Clearcoat or thinner and additive for the clear, no sand paper, no tape etc. FYI buy a painted one for 20% off.