on a questionable build, i would rip the heads off. thtis allows you to check stroke, bore, cc, deck height, valve size and condition. okay, might as well pull jugs and mic for cylinder/piston clearance and inspect rods. if all is well, its just a day of having a few beers and new gaskets. if all is not well, now you know and can blueprint as you go back together. once this far down, another hr and you have checked crank runout, gear lash or chain tensioners, confirmed which cams are actually in there and inspected/replaced oil pump.
yep, you see where this is headed----------for peace of mind, you just rebuilt your engine and it is done correctly! after all, if build wasnt suspect, you wouldnt have made this post.
good luck and have fun!