Assuming there is a question in what you've posted I think your asking the following.
"Where is the discrepancy that you speak of? 
In your world, where would you prefer the placement of the O2s? and why?"In this case as reported to me by Dave (the tuner)the bike was running lean as tested by external O2 sensors on a sniffer and the tune was a PV based calibration that the PV had tuned in. This is common and has been reported before to us and I have personally seen the same thing with this pipe installed. So the pipe O2 position is causing the O2 signal that is sent to the ECM to be false or misleading. The ECM is just following what the O2 sensor is telling it to do.
What I would want/expect is a O2 placement that allows for an accurate reading of what the engine is doing, not something it's not doing.
Here are test results I just did last week comparing the accuracy of what the ECM is capable of doing with the stock sensors in a properly setup exhaust system to a Lab quality measuring system.
Target fuel Ratio of 0.983 Lambda by the ECM
Measure Front Cylinder exhaust (RPM vs Load)
30 40 50 60 70 75 80
1000 0.979 0.985 0.984 0.986 0.992 0.993 0.992
1500 0.98 0.985 0.985 0.984 0.987 0.989 0.991
2000 0.98 0.981 0.982 0.984 0.986 0.986 0.989
2500 0.987 0.978 0.981 0.983 0.985 0.986 0.981
3000 0.991 0.977 0.979 0.98 0.981 0.982 0.978
3500 0.984 0.978 0.979 0.98 0.98 0.981 0.98
4000 0.979 0.981 0.987 0.986 0.983 0.982 0.981
Measured Rear Cylinder exhaust (RPM vs Load)
30 40 50 60 70 75 80
1000 0.977 0.982 0.985 0.986 0.987 0.986 0.986
1500 0.979 0.985 0.985 0.986 0.987 0.988 0.991
2000 0.98 0.985 0.985 0.985 0.985 0.983 0.985
2500 0.985 0.983 0.983 0.983 0.983 0.98 0.977
3000 0.99 0.981 0.98 0.981 0.982 0.98 0.976
3500 0.982 0.981 0.982 0.981 0.978 0.979 0.981
4000 0.976 0.981 0.98 0.982 0.982 0.983 0.98
If you run the numbers you will see that the ECM and stock sensors will and do control to within +/-1% of commanded during this test. I've run this very same test many times on various pipes and seen them change the results so badly that in some cases the ECM control just flat stops working! So the idea of blaming the issue on the ECM or the stock sensors is pure BS.
