What do you use to mount it with when you move it to outside the fairing? It's a magnet so it will need to stick to something.... I'm pretty sure I fried it with the new bracket. When the magnet was placed on the new bracket, it most likely magnetized the whole bracket. The power lock module is nothing more than a circuit board pack gel. I'm pretty sure the magnetized bracket fried the board.
First things first. Remove the XM antenna and bracket from the module mounting stud and move them as far from the module as possible. Try the lock fob and see if it now operates. I would hope that Harley would have specified shielding for a module they mount in very close proximity to a stereo amplifier, other electronics, and speakers with magnets in them, but considering all the other obvious things they didn't think of over the years who knows. I doubt putting that magnet close to the module would "fry" it, but it may be causing some kind of interference with the signal. It's worth a try.
As for bakon's suggestion to mount the XM antenna outside of the fairing, we've had a few discussions about that very thing around here in the past. I for one think it's a great idea to move it out in the open, like we do on automobiles, for the best possible reception. As for mounting it, I'm partial to a 3M mounting tape, sold under the Scotch brand as catalog number 4011, exterior grade mounting tape. It's grey in color with a red peel-off backing, and I use it for all kinds of things. Even though it says it's permanent, it can be removed with some effort and without damaging the surface in my experience, in case you're worried about that.
Jerry