Logged a little more time with the TTS over the weekend I think I am getting there.
Attached is the latest Datamaster2 VE table generated.

I'm not getting any data past 60% TPS, is this normal or am I being too easy on the throttle?
I read the TTS guide after starting with the old guide by DOC and realized I didn't set PE Mode to 10,000, it's still at 4300 so I'm guessing that's why I'm still seeing some red in the 4500-5500 range. I will correct this and do another run.
Should set the PE Mode and start over from the base map (before any Vtune adjustments) or just continue from this last Vtune run?
I have been allowing Vtune to adjust the EGR every run. is this correct and if not when should it be done?
Also wondering, once saved the Vtune file opened in Mastertune it looks like this...


Looking at the front VE for instance, 25 TPI and 3500 RPM value is 99.
In Vtune that cell is white yet in Mastertune it's red?
Not really sure what the colour codes mean in Mastertune VE tables though.
Also Front cyl has a lot of red yet rear nearly none?
Is this normal?
Any tips on how to ride in order to get the best data?
I've been trying to simulate throttle positions so for instance 4'th gear start at about 1800 I would twist the grip to around 10% and hold it to about 5500 rpm, slow back down and do the same at 20% etc etc.
Also hit the highway and ride at various steady speeds as well as slow down speed up, accelerate as if passing etc.
Since I seem to be missing a lot of areas is there a better way?