Murphy,
This may not be a complete list, but here goes:
Complete paint set
Tank emblems (second set mounted wrong)
ECM times 3
Mufflers
Heated grips times 3
Garage door module
Exhaust heat shield
Motor mount times 2
Tank center console
Throttle cables
The labor hours spent searching for the exhaust leaks and pinging would make your head spin. I refused to spend $$$ on the race tuner (for now) just to get a $36,000 bike to run.
Right now the bike is running great! We are very happy we kept it, there has been many weeks/months with the bike at the dealer that we considered selling it. As of today the bike is staying with us. Dave