Many times it will come down to real testing. We swapped a stock t/b on a 107 kit with a 54 cam and the larger 55 t/b from HPI picked up in the low and mid range area. SO one might think that it will always do this. Not the always the case. If a unit is too small to start with then of course the gain will be there.
Just finished another 107 HP Kit engine build. Ran the HPI 55 FBW , it made the same power as my own bike with a 58FBW and the HPI manifold. SO did I find the point where larger does not work, or do the two units flow the same??
With proper tuning it seems hard today to install a t/b that is too large. Mike Rolland did some testing a while back with 57MM( I think it was 57mm) t/b on stock engines and could not create any issues, gains where almost nothing as I recall. The air pump will only use what it can, being that you are firing the fuel into the intake port at 59-60 psi hard to mess that up. Even the stock units can get the job done, adding volume may be useful, or it may not. Again what you see on paper may turn out to be nothing under normal riding. I know that if I was racing or laying into the engine hard, I am not going to pull a tall gear and low rpm. Drop it down a gear or two , get the R's up and run the engine up to peak hp point.
WOT pull is a dyno test, not how one rides on the street.
I do not think you are going to hurt the over all set up by running a larger plenum. I plan on running a 64MM on my 120 I am putting together. Why not,.. who would have thought I could get a 58 to work correctly with no downsides on a 107. It will come down to the tune being correct. It may require a bit more work in the low rpm areas to ensure great drivablity but it can is is done on a regular basis.