mavrik,
Couple of observations:
1. "CF: UNCORRECTED Smoothing = 5" from the chart. SAE correction is customary, and necessary to make valid comparisons to other runs.

2. The air/fuel ratio below 2500 rpm is all over the place, going from lean to rich and back to lean. This corresponds to the dip in your torque curve. From 2500 to 5000, the A/F is leaner than what most tuners run for best "safe" power.
3. The rpm's appear to go to 6500 - why such a high rev-limiter setting? As you can see from the chart, power and torque fall off rapidly well before that point. I would recommend backing that off to around 5800-6000.
I probably missed this information, but what other mods do you have besides the LSR pipe and SE air cleaner? Your peak numbers look similar to what others have reported with pipes, air cleaner, and tune (hp in low to mid 90's, torque around 110-115), but that big dip at low speeds needs to be addressed. Could be the tuner, could be the pipe (I'm not convinced that a 2 inch I.D. head pipe is a good thing for a basically stock engine with an EPA cam).
Jerry