Since every engine is different, I don't see how setting up these cells blindly, just based on AFR, would be the ideal map. I would still think the only way to optimize the map would be on a Dyno. Why mess with it after that? And with the TM/AT, doesn't the program Automatically tune for optimum performance. I would expect it to. After all, that's why you would use that in the first place. What am I missing here?
Hoist! 
The Thundermax has a map. The map was designed by pros. They insure that you will have a good running motor all across the band. They do it pretty well. After you put the TM & AT on your bike, it will autotune to the setting on the map THEY created. And again, it is not bad. But, taking into account different idiocycrasies of YOUR bike, they then leave room to play. For example, IMO, I would try adding a bit of fuel on the map for MORE power at the top end. Seems on MY bike, this works for more performance. But again, the map is good, and the AUTO TUNE will let your bike follow it carefully. That way you know exactly where each cell is regarding AFR. In MY case, running back the AFR from the high end stock number of 12.5 to a richer 12.1 worked for me. Other bikes may run in the leaner side, but I doubt it.
Bottom line, is you are only going to get so much for the stock config. You can play a little with timing too, but unless you know what you are doing, best leave it alone. The auto tune works wonders for holding the specific AFR's
I would also think it would be difficult, becasue of each bikes' differences, that you can ask Zuippers for a pure performance map for the 110 & AT. I think they did good, and the problem becomes, if I read this correctly, that again, each bike is slightly different. SO me, I add fuel, and it works. On an earlier thread, I mentioned that the AFR may not be the TRUE afr. It is also adjusted with timing, temperature and other variables for the targets. Hope this helps a bit.
Rhino(fasterjester)