I have an '09 FLHTCUSE4, and I have the very same problem with heat that seems to be being discussed here.
I was in stop and go, and it reached the point where I couldn't get the clutch to engage without feathering it excessively. (Think starting your bike from a stop in third gear...,) The engine also sounded like a coffee can full of rocks, and stalled a number of times. Prior, I was also having some major issues with pinging during passing.
The MOCO stated this was a service bulletin issue, and 'remapped' the bike. The pinging is a little better, although the heat is unchanged, and my seat of the pants dyno indicates that the power has fallen off considerably.
I understand the thought behind remapping, and have been told by an independant garage that I don't need an aftermarket fuel management system. He says the dyno operator can 'flash' the existing MOCO system with a new and hopefully better map.
Before I get to the next question, is that so?