I have one more piece of diagnostics to try that may at least narrow down the problem. As you can tell, I am sharing a lot of frustration, and can't get a grasp on it.
If I am correct, you had at one time mentioned that you added a power commander and a tune on this bike, and noted that it ran fine.
Well, is it possible the sensors are bad on the Autotune? Before anything, I would try the following before tearing into it again. Disable the sensors, and set the AFR's in override? for 12.5 or richer across the board and take it for a ride. If i am not mistaken, disabling the closed loop from the module may do this, but I cant read enough to go over that detail. Perhaps this process of elimination will help, and at least feed the motor the extra fuel.
At least you could discover if the AFR metering side is actual hampering the flow inadvertantly. A 02 sensor can go bad, or, it can get coated, and send erroneous signals to the TMAX.
Rhino
Rhino, some of this may have already been covered. Speaking only to my case I have a spare o2 sensor and have swapped it in and out of both holes. Never altered monitored data in the data stream at all.
The bike had a Power Commander on it a long time ago. Well before any of this was going on. No o2 sensors at that time either. The bike is an 05 so the sensors were added with the TMax installation.
Another member had written in PM of a problem with his bike that only happened while his autotune module was enabled. It would run progressively worse the longer he rode it. He could turn of the autotune function and the bike was better each time.
That's a different problem than I was experiencing. On mine smoother idle, easier starting and other subtle variations were gained with riding. All indicative of the autotune functioning (it seemed to me). But just this morning I did give that a try. Ran it in 80 degree temps with the module disabled. Still pinged. At 80 degrees ambient it was always much lighter. So it was light this morning. But the ping at 80 degrees ambient temp with the new revised map was only slightly less than it was originally. So disabling the autotune module didn't give us anything different either.
I did not, however, richen it up even more as you'd suggested. Was already more than a little surprised that this much pinging was still going on with the base 13:1 setting unaltered (with the exception of what the system itself might be doing). 13:1 isn't close to lean. I'd hate to run it even richer. Will certainly give it a try just for purposes of instruction. To see if it makes any difference. But can't see leaving it that way for the long term.