There's actually not much out there on EXACTLY how it woeks. They tell you what it will do for you and how it hooks up. I found this and stopped looking. The guy makes as much sense as anything I've heard. This is from the HD Forum after a Google. Dynojet tells you much less. They don't want you to know EXACTLY!!!
"How the Power Commander III works
The Power Commander is a piggy back device. This means it is installed between the ECM and the EFI wiring harness. It remains attached to the bike after installation.
The PCIII DOES NOT modify any of the internal lookup tables. It interprets the data coming into the ECM from the sensors above and manipulates the signals to make the ECM see different readings. At the same time it manipulates the output signals to the fuel injectors and ignition coils to achieve the desired results.
This isn't as easy as it sounds. The PCIII has to do the following to work correctly:
Analyze the incoming signals
Determine the proper fuel and ignition advance required
Determine what signals and values to change
Change it's output signals to the ECM, Injectors and Ignition to achieve the desired result
And do it in a constantly changing environment
I'm not sure the the exact method they use to achieve their results but I'm pretty sure it's a combination reading the ECM inputs and manipulating the signal pulse width to the fuel injectors and delaying or advancing the signal to the ignition coils.
This is all controlled by map files that you or your tuner manipulate and download into the PCIII.
The newer USB version offers an accelerator enrichment function (not really needed on our bikes since that is part of the basic function of the ECM) as well as the ability to modify the front and rear cylinder independently."
I think to find out EXACTLY how Dynojet does that, you'd probably need to contact them and ask for that proprietary information. I'm sure they'd be happy to oblige!!!

Hope this helps.
(If it's right! After all, I read it on the internet!!!)

Hoist!
