I have some Harley Virgin questions that may be silly, but please bear with me.
Besides the obvious stator issue, did you have any inkling that these other problems were happening? Were you noticing any noises or power loss?
At 55K miles, it seems like a lot of this stuff would be normal wear and tear issues. At 12K miles, my pistons and heads had at least that much build up, and at 5K miles, my compensator looked worse than yours. Is the wear on the cam tensioner pads unusual? It seems like they should show some wear at this point, regardless.
I guess what I'm wondering is this: Besides the stator, starter gear teeth, and maybe a couple other things, wouldn't we expect most Harleys with 55,000 miles on them to show the kinds of wear you've found?
Ignorance is bliss, and as long as we aren't having problems, maybe it's better that we don't know that there's some scoring on a lifter or that the local Harley tech didn't install our rings properly.

Stator was indeed obvious
Comp cam had no symptoms
Primary chain tensioner had no symptoms
Chain adjuster screw was a result of let's just change "this part"
Clutch basket had no obvious symptoms, just felt it was loose when pulling the chain for the alternator.
Clutch hub teeth had no symptoms
Crankcase case seal race had no symptoms
O2 and exhaust. That was because of the excessive heat I get off the D&D fat cats. Heat was an issue with either the SERT or the Rev P EMS
Other then the heat and poor mileage the bike ran OK
Cam tensioners had no symptoms, but there really has not been much of a track record for the hybrid plate with miles. So I don't know if the wear is normal or not. I would think at about 25K on this kit that the wear I have is normal.
Lifter scar had no symptoms
Cams had no symptoms
Heads had no symptoms
Rings had no symptoms - maybe.
The bike did not use oil, about a quart in 5K
I have had the dipstick issue for awhile but always thought it was related to when I did the cams.
Now I am hoping it was related to the rings. The rings were done at around 11K, the cams around 20K. There is a good chance that for the 8-10K of miles between rings and cams that I never did a WOT through the gears. The dipstick would only launch if I ran it hard over 3500 RPM.
Below 3000 and light throttle application I could ride with no dipstick and not blow any oil out (did it twice).
The trans - I have not really liked the way the trans shifted since the install.
Wear-damage to the rotor and spacer - very noticeable for the loose comp nut. My wife heard the knock when I pulled into the garage. Brought back memories of my POS 74 XLCH
Ring gear, I complained about starter grinding since the first service.
The wear on the comp cam, the splines missing on the clutch hub and the failed snap ring in the clutch hub may be related.
When I did the 6 speed I put my auto chain adjuster back in. Baker does not recommend an auto chain adjuster, although when I queried them about it I was not given any reason just that "we do not recommend".
I had that in for awhile before I switched back out the the stock type adjusters.