Just my .02 worth, but after you get the problem solved, I'd go back to that store manager or better yet, write the owner and tell him everyone on the forums on line is aware of how they treat a new customer who just spent $40K on a bike from him. Be specific about the advice and level of service you got when you write him. Let him know you've written the Moco about them as well, then let him know that he's lost your business for ever. He's not likely to care, but at the very least, it'll make you feel better!
Dealer's like that need to eat a little humble pie every now and then. It's good for 'em.
There's absolutely no reason for treatment like that after just buying a brand new bike from them...especially a CVO.